![]() ![]() Split the mol into as many chains as are found Look for non-water chains longer than 5-10 residues Would prompt for the database and disable the superposition You for a MOE database, and will then proceed to splitĭb_dissect_protein_system, ] If the input database is null, the function will prompt (4) The function will take a few moments to dissect,Īlign, optionally superpose, and color the system. ![]() If you would like to disable superposition,ĭissect_protein_system, ] In a MOE menu file or at the SVL command line, type a command such as svl> dissect_protein_systemĬhains is the set of chains to consider, for all chainsįor example, if you would like to split and superpose all chains: Press 'OK' to dissect the system into subunits. The units onto one another (useful when comparing homo-multimers The 'Superpose Subunits' option will automatically superpose Select the atoms to dissect - 'All Chains' or just 'Selected Chains' In a MOE menu file or at the SVL command line, type a command such as gui_dissect_proteinĪlternatively, drag-and-drop this SVL file in MOE window. $HOME can be determined at the SVL Commands windows. The directory must be created if it does not already exist. Copy this file to $HOME/moefiles/svl, where $HOME is the user's homeĭirectory (e.g., Windows: C:\Users\walter\moefiles\svl\ or Linux/Unix/macOS: (5) Aligns and optionally superposes the system system is colored to reflectġ. (4) Reparents and tags the system objects so that the chains reflect the new grouping. (3) Associate every non-peptide molecule with the peptide set it is closest to (in Angstroms). (2) Groups related peptides with one another into sets. (1) Splits the system into sets of near-identical peptide sequences (>95%). Given a multiple-copy PDB (see below) the function. Function dissect_protein_system (the split) ![]()
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